How to analyze ChIP-seq data

I am a computational biologist converted from a wet biologist.

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I was given a 2G file of ChIP-seq data by my PhD supervisor, but I had no idea how to analyze it.

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I learned it the hard way through numerous hours in googling and taking a lot of online classes.

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Now with over 10 years of computational experience, I want to help you to make the same transformation.

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• How to analyze ChIPseq data starting from FASTQ files
• How to align the reads
• How to call peaks
• How to call SuperEnhancers
• How to generate bigwig files for visualization in IGV
• How to put all the commands into a shell script
• How to make line plot and heatmap from ChIP-seq data

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